Meta-Repeat-Finder

Acknowledgments Documentation

This tool uses several programs to search for tandem repeats in a given amino acid sequence.
The general concept is described in Richard and Kajava, Journal of Structural Biology 186 (2014) 386–391, dx.doi.org/10.1016/j.jsb.2014.03.013. Publication of the current MRF version is in preparation.

Paste one protein sequence in FASTA format (Example):

NOTE : Maximum 15000 characters

Options

Finders :
T-REKS
Trust
Profiles
Regex
Selectseq

Post-treatment :
Enable more rigorous selection Select results where the Tally-2.3 score is greater than or equal to 0.5, and the p-value-phylo score is less than 0.2.
TREKS :
Disable overlapping repeats filter
Disable the sequence splitting
K-means value :
Percentage of similarity - Psim:
TRUST :
Disable 'force including local alignment in analysis'
Gap penalties: Open Extension :

Substitution matrix: